NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307477_10000156

Scaffold Ga0307477_10000156


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000156 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96614
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (83.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004875Metagenome / Metatranscriptome420Y
F007543Metagenome / Metatranscriptome349Y
F015675Metagenome / Metatranscriptome253Y
F026939Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000015666F007543AGGAGMDSNYVFLCGVMWCKFGQKDAGKELLRAADSGDPDMKALARAMFAKGVRRLKELEKRMQPSSRAILGEGLGG
Ga0307477_1000015667F026939GGAGGMTPQISKTTDDNLQVELDRLTYSAYLLTLDPGKAFSAVTRAIDGSLEGTTVNADLLERTVDLAVEEVLCESGKRWDGESSAIDAVFYERPAAINSKAFQSLQDLSSSPIFLLDATSRIAFVLHHVLGYKISDAAAKARLTEKQYRAQLRRAYLQLASFRLESGTSVSHGVEQSAPTWEQKYELVEMDSRLLV
Ga0307477_1000015676F004875AGGAGMTRTFSTFVLPILRAGALVCVVLLLSGSGLAQDQEVVTATATIPFNFWAQGHEFQAGDYFFDNKVPGSATIQREGSNLGIGVSVILYAVPQQEENPRVIFIRREGKYFLVELWGVQGRYVVTAEFAHRGEVSEQNYQLRLTPVQSDDQ
Ga0307477_1000015679F015675AGAAGMLTNHEPDRNIEDLTDTEIYNAIRYLDPKSANEKVGGDRDKDIGVVICAFLCVALLACLTFVWFYWR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.