Scaffold Ga0307477_10000152

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000152
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97267
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (89.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005077	Metagenome / Metatranscriptome	413	Y
F006863	Metagenome / Metatranscriptome	363	Y
F020501	Metagenome / Metatranscriptome	223	Y
F098101	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000015268	F020501	GAGG	MDLIEYFERQKHRCERELKYADTPGFQLFEKTPQGEQDITAQHIQQLREARDEYQRMIEYLKARD
Ga0307477_1000015269	F005077	AGG	MDQLRRDRAAAQVLRAAFPTLQHLRIELTFRGPGSSAPTPQSHVLYPPARAFFEYRCPYSDCDGQFDLGAAVKAALAEEPHRAEGVLECHGWRGLNHTSRRACLLQLLYEVTGTYQQQS
Ga0307477_1000015272	F006863	GGAG	MAIKRPSKSMGTRLRKPVASVAARHVDLRSKQQMIPGDRYLGWLCKNRSCGVVMAIALPPAGGKVVVPEVDDQLTALKCPHCGDEELYRWSARSEHEYTPKSVAI
Ga0307477_1000015284	F098101	GGA	MSSSASLPVPAEVFYVVESSGVLGRREHRLASVLFETRSHAHNELTRVTAAHPGDYAIWKSTTYIEPPQWGYAVIRADGTVVPPEAGLAALP