Scaffold Ga0307477_10000110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307477_10000110

Scaffold Ga0307477_10000110

Overview

Basic Information
Taxon OID	3300031753 Open in IMG/M
Scaffold ID	Ga0307477_10000110 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	121453
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	95 (76.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011249	Metagenome / Metatranscriptome	293	Y
F040193	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000011019	F040193	GGAG	MSISEWWRKRRLQRKGSTLGSKVLDEAAIGARVDMVCLEAFAEAAYDAMREAKQRGVKSRYEEARLHFDRAIEAAHRARLVDEAARLKRRRDHIGQVYNGQVRYSGDG
Ga0307477_1000011062	F011249	GAGG	MKMKSLIGMGGIAALGLAASAVVSLPAFANGGDFFNELSESWGSNSDTGVPFFGWVRDAHGKAIPRAIVTATVVGGVDGEAVTIISDNLGHFKIPGLGKDVDPKKVVVECAKAGYRTVSLDRRILRSVAKAPVEVDCKMQASAAPIS

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