Scaffold Ga0307477_10000093

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000093
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129721
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (64.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000688	Metagenome / Metatranscriptome	937	Y
F003670	Metagenome / Metatranscriptome	474	Y
F008511	Metagenome / Metatranscriptome	332	Y
F009983	Metagenome / Metatranscriptome	310	Y
F016091	Metagenome / Metatranscriptome	250	Y
F024494	Metagenome / Metatranscriptome	205	Y
F053492	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000009321	F003670	N/A	MRVSISVKMTLAACFYLLTFFLTMPAWARVHSHPAKQENPSEPGYVLALGAANHFLHAWQTGDVETGMVLVSDGLRHTQSADKLEEFFSNATDRAFEITRGHGHHGLYSFPVVLVTLRGSHVVRRFSEIILVETGKNDWVVDKLP
Ga0307477_1000009346	F009983	AGGA	MKISRICAFVLLLVVGSVMAFADGINDPKIIIQGVSGGSSPQSCEKGCRNVGVNFSFTIPKSGKGFLFFTNASGKNWTSLTLVEKGVPASAISCSQTLFLSCAKKTVGNSVEIILSGIKGGENARKGIMNGQSFEIGFACVAQSCWTNRGSTMTAHAGTAPEPGTVALMVTGLGAIISRRKLWKSRLKA
Ga0307477_1000009367	F000688	N/A	MTHFPQSNVNQRSPRVQLFGSVTAAVMAEGGQRARAKLQTISITGGLLQLQHELSSGDFVEIAFHTRSGAIRGMAEMLLPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPASEQLRTPLGF
Ga0307477_1000009369	F008511	N/A	VGVIVASLSLIFGLLVVSFPVSFPRIIVTSWQGGYLVLVMMVLTLVLDAFLYLRVSYLRSSKPTVLVAACLGSLPIIVVGGLSFLLESAVTQTLSLDLPNVQGRVNEEVLAHTYLGLVAAVFLPFLVIRLLQQFKTTS
Ga0307477_1000009370	F016091	GAGG	MSIKWLLWIGLYLVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLVGLVVVISVIWNLLQSQFMQQTIAVAAVLLAVVGTMAGDVWIESYCRLSTGTSCNPERTWRDSRNLAFLVFSMAVVVEILLDRFAKVAAL
Ga0307477_1000009373	F053492	AGG	MSAETHHETRKVGAVIYLSTNRPLHLPDFLHEFHQSWPRLLLQKTGKEPHRALFRVGNSDFTLELHHTPVPLEVTGPVVQSARHWPMAGAALAPHQAHLSVAESAENSDVLSLACDLTKAIAALLPITDSLAVCWLNGPALNSSESFVDTAREMFGTGLYPLKLWVAVRWDAQAGALHTRGMAQFGAPEIRLAEQSDADPLMVDYLFHVAQSVLTLHHSIPDGETMDSPQGKLIIEKSGIPGRRILLLEPARPK
Ga0307477_1000009396	F024494	N/A	MHCAHVGATFKTEEASQEENPLKLKSLAVITLIVLGCSAAFGQTFSLGFQGHSGTQYCDYEVVKVSAPYAAGTHNLTTDCGSSVDGVMVGFKAYIPATSGAAVTGTVIEMGDNFVDASYQAYTGCQVDWVTKTKASTLHYGWAVYESCSGGSDFLLNYGYLTTKLGATKQQAGAKITSFGAALAKAGTGTKK