NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000053

Scaffold Ga0307477_10000053


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000053 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)179840
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)143 (85.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001621Metagenome / Metatranscriptome662Y
F010410Metagenome / Metatranscriptome304Y
F034523Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000053107F034523GAGGMKKRWIIAGIVGVGVLAGAARAAEHSYNPIKWIKKGPSPTASQQLAANSGMEKKLTIQLQAVLPPRTSLKDACAQFKGLDECVASLQVSHNLKIKFNCLKWDVTGTKPAGDVKSCEAPSREKGMSLDRAIRELKPDANARTESKNAEKRAREDIKDASS
Ga0307477_1000005353F010410AGGAGMPSTDVKPKTLKGKFCAGFTIAMLLIPAAFAGDGDQPAYCKYVTQQAAAQRDLLLTPNAVAGATQPNTGLPMQLVWGISGSLSNVRKAGLTMDEARKNCELYGAASSAQQAIQYALPSLEKQVLQHRLGLIQKASEGLDALLATTTKMLEAQNVTRPVAFALQTTKIKLEADRADTQSKLAAIYTPQLGDKPLKELVGEKQNSEVNERQALDKLNRQNNWDVALSVGAHQQINPLIGNQAAYGEVTVSYNLASRAINKHLDQAAHAYDDWKRVQEGDVIRNAEVLKQQIVNSISVQDGRLKALQEQQKQIESNLQLLGGAETTAAVDFRNQLTTAQLLLEIEIGDASFRLDQLREFLDRN
Ga0307477_1000005390F001621GAGGVNVPVPKYVTQGRAAVLLGIPEEELSRISMESGFGHRERAGNVEETFFTYEELRKICQLAVHQVH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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