NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000022

Scaffold Ga0307477_10000022


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000022 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)264958
Total Scaffold Genes238 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)181 (76.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000408Metagenome / Metatranscriptome1172Y
F000536Metagenome / Metatranscriptome1044Y
F001959Metagenome / Metatranscriptome611Y
F002714Metagenome / Metatranscriptome535Y
F029158Metagenome189Y
F074441Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000022133F029158AGGAGMTPGSAIERILELSAEAQIKRREAAEDSPRFHNLSGAIVAYGKALDLLSKLAEVQTEPYSDN
Ga0307477_10000022136F002714GGAGMTAYTVSTMDKLQAFQAAAREGGFVQVEESEEGTVLWFRKEASDTATETHQRMCMDSLTNSVTVYWASVPGKIDSKTFRSVSTLQEWFALRPVH
Ga0307477_10000022137F074441GGAMTNREAIQRLSVNKDDHAAAMSLHDNNAEVIRTTVMRYFGTGKVADKAESALMERMADSARSYQHPEDPDVWLARCANTECDRLRNEAIHEKANKD
Ga0307477_10000022151F000536N/AMPELSPQQMQTLERLFQAGFRPIAIPPYENALCVRRGECAAVLAPIPGGQLTLLAPVSYLVDGNLSVKLKKGTTEVFVWKKSEIAATPERLGELETFRRELTALLEPAPKQ
Ga0307477_10000022164F001959GGAGGMKNLDSVFAAYLIGWGIFFVYFLSVARRTSALREDIERLKSSLNRSK
Ga0307477_100000223F000408GGAMAVRLPLKVRGHDTRGVAFEEETSSENLCRSGAAFLTRFNVAVGSDLEIRIPLSRYASRRGESDFQTQGRVVHVANSQPDGERLVGVQFTGPRFHRVFRSESAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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