Scaffold Ga0307477_10000018

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000018
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 272730
• Total Scaffold Genes: 255
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 196 (76.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000893	Metagenome / Metatranscriptome	846	Y
F021843	Metagenome / Metatranscriptome	217	Y
F095798	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100000182	F095798	AGG	MDGRQPEFEAVFGVAGVWKRLLSQSDGYLVTEVWCESSEARQYRVKDFWNWHRSFENFRARFQREFERFENWIASEGLIEKEQFLGAYYERRNEDGDEDELVPG
Ga0307477_1000001880	F021843	GGAG	MKKWKIDRIISVATLVSSALALFLVLKKPQPVAPPQPPAVAAANAQSFQTKVEQFEQAKEPGKPPAEIRLNSEEVGAALMQAASTIPMSSMQPAAAPGIPTSVPSSPDAPIAAGEPEVKDYQVNFDGDVARGQFVTKIAGKDVYVTLAGHLGSKDGYATFDPTEFKVGDLNVPVSLVNDALQKKLSEQKDRLKLPDNVGEMKVENGQLVMTQK
Ga0307477_1000001884	F000893	N/A	MLPIHSKIDRAQRLVRMLEQDAALLAVRVEQLTPEYQQSAKNYAAKLTAHARAELEKLVQEKYFFDWNETSPHAAD