Scaffold Ga0307477_10000007

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000007
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 386170
• Total Scaffold Genes: 317
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 268 (84.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F000923	Metagenome / Metatranscriptome	833	Y
F003702	Metagenome / Metatranscriptome	473	Y
F034694	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_10000007110	F034694	N/A	VKDHLLGLAGILPWRCGACETRFRARVEPLHNLFYAHCKICGNLELQRISGEHVPGMTSIFGRMFGIPALRCEPCRNKFFSLRPVLREVRNIAAAGSD
Ga0307477_10000007171	F003702	AGG	MKRHLLTILMSLVAAVISGAIFVAALFHQFALVEVAASILTGLQVLFLSSSIGDLLDEKKVPNRARNSAVVLVTVFLVAFYSITRYFH
Ga0307477_10000007232	F000678	AGGAG	MDQFEEFGKRIDQEFARLKSINSFEDFGRRVDEELKRVKSFVKEEVTPETEKRTAQFLREVSEKLTEAASWIEARNAARPAQPPKDAKS
Ga0307477_10000007313	F000923	GAGG	MKIKDNGRKWMWWLLGAVVALQFFYVRELLAAFALFALGFAVIALAFGSLYMLHRTWVMAVERLAESKNPVMVTARQSMYAIEDLARRPFRRPGSATARS