NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000006

Scaffold Ga0307477_10000006


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000006 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)393421
Total Scaffold Genes338 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)271 (80.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000438Metagenome / Metatranscriptome1143Y
F000753Metagenome / Metatranscriptome906Y
F001597Metagenome / Metatranscriptome666Y
F003177Metagenome / Metatranscriptome503Y
F011263Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000000614F000753AGGAGMVTVKANQKIFTDAEVATLTGICVDHLRNFAKSRHLGFIARAAEAAGIQADQWLFTLSDLMVLVTLFPRCSH
Ga0307477_10000006187F003177GGAMVNEGTIRIHRSIGGTGAAFRVSFVPYSSDGESTAAVRAFHEVQHVRAFLKLLGVGAELIKDALRQLAAGRSASVPNVSLSDEAVKSAGLTSTENLARSRG
Ga0307477_10000006251F001597GGAGMRDESTKQAAQEYLAAKLTEEEQIYEEKHNMATAVARAPLVWKSIKDAIFEKCGEWNAVTQEETLICKETTIGDIRIWCAARSKQMTVQYDSKKLLITVKNAGRLEHEKDVILHIEGYRTGSDRGDRDARLVRNEQPVNIDVLIVGELRVLTGLSRQRNA
Ga0307477_10000006294F000438GGAGGMDRFEEIGHRLDEELARLRRFVEEEVAPETERRTAQFLREVSQKLTEAAAKLESRYAERSSQNPPNPQP
Ga0307477_1000000656F011263GAGMVTPERLLRLIIEIIFVLLGGLVVWLGVTGHLFFDRRKTSWIVVSAALLLWGLRAIYKPNKWWARWENWTRGLSLTLLGVVMLAISRVPFAWVGPLLAAGGVLLMLRGIIGAALVFRPR
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