NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318494_10323811

Scaffold Ga0318494_10323811


Overview

Basic Information
Taxon OID3300031751 Open in IMG/M
Scaffold IDGa0318494_10323811 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)890
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016121Metagenome / Metatranscriptome249Y
F019070Metagenome / Metatranscriptome231Y
F031725Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0318494_103238111F016121AGGVLFTASTRSRQEIEDLAAEARRLRPDVEIFIRPPDGAAYC
Ga0318494_103238113F019070GGAGMQTMLNIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETLPESTRFDRAASFDEEDVGATIPDVGGTTQYDRHTSPHESARHSPGKSKGRSASAHYAK
Ga0318494_103238114F031725N/AKRIAELLHELADARTVAMITGCEAAALRSRLEILTDERRRPWWRGWFR
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