Scaffold Ga0315293_10331859

Overview

Basic Information

• Taxon OID: 3300031746
• Scaffold ID: Ga0315293_10331859
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_103318592	F067397	N/A	MGKMKDLYYELLHANNGEIPQEATIADLARMNDLKIYEWREYERTQNHVKKPKNEGNIEG
Ga0315293_103318593	F065418	N/A	MEYTVNDILKECDTLVYEFQNSPKKRLRPLLDKRNYLIAILYYKFGYTEEKISTIYNIKRISVSVSKKLPYTLLEYGDNVFKENTKDYLIKYPYDFPSFSNKFKKDKYITISFDIKTLKKIRAYRDIVNEKTTANAIKRLITNGLQLWEK
Ga0315293_103318595	F070857	AGAAG	MKVICIDADNKPQNVPIEEWVKEGDMYNVTRIVRMGLQKDIYGFLLKEVQLSSRSFPYELYNASRFLPIDILSDIKKEEKINVEDVNLELI