NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10200323

Scaffold Ga0315293_10200323


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10200323 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1641
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019447Metagenome229N
F053294Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0315293_102003232F053294N/AMKNFFKKLMGDGSDVSSKRFSGIITLINLIGLAYVATYKSGVTPEYMYDTLALLCGSFLGLTTLEAIFAKKKNPEPKKDGE
Ga0315293_102003234F019447N/AMKTIPKEKLVQALKILYKLWKREHDSDSDWPSKQYIEWDQGDPYKFYYKYEKQLGLGREADDYYYWMNALEENEDNLDNETLTVDNVIVPKYHTFDVETYEDRVEQVHVTYEGQVEGYFNEDQLYKSFYELGQGEVFDFYDFSETDRDYGDGEGQGIELRKITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLL

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