Scaffold Ga0315293_10132950

Overview

Basic Information

• Taxon OID: 3300031746
• Scaffold ID: Ga0315293_10132950
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2087
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F023833	Metagenome	208	Y
F088505	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_101329501	F023833	AGGA	MKSHSELIQDILNDVRVKAADLERERCADLVQQLADGTEDAVITGILNEVVVAIRRLADV
Ga0315293_101329505	F005702	GAGG	VIIFLVAFFGLLILQGVRIFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKEPREPELLLPTKNWVGRN
Ga0315293_101329506	F088505	N/A	EIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW