Scaffold Ga0315293

Basic Information
Taxon OID	3300031746 Open in IMG/M
Scaffold ID	Ga0315293_10067496 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031746 Open in IMG/M

Scaffold ID

Ga0315293_10067496 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3074
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3074

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5395	Long. (^o)	-110.3891	Alt. (m)	Depth (m)	61
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5395

Long. (^o)

-110.3891

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_100674961	F002433	N/A	EVSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIENRLDQLLLEIALKK
Ga0315293_100674962	F005503	GGAG	MTTSEIGIFVIMAIACILWAICSYSVGYKEGHKDGYQRGKAVKRHASSQAVR
Ga0315293_100674963	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLEAHIVEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGYLAAYSEKMRRWMVEDTCTSALMRVMALVLGAAEKATQEVMAQVNGKSPKAMDYDYWATKFGDVPSYQTREEAEEAVETQTPEAVPSCSHGSMRWNQSKPDAPKAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV
Ga0315293_100674964	F000403	GGTGG	VSDYIEIIHPQTMTAKLLCNGVVVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTDNIIWFCGDCR
Ga0315293_100674965	F000903	GGAG	MIDRIEEVQCMLAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGSTPKMHIVGWMPVAVAKRPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI
Ga0315293_100674966	F003182	AGGAG	MHILQFDCAICKKLYGKPKQRFGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIVELSQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315293_10067496

Overview

Ecosystem & Geography

Associated Families

Sequences