Scaffold Ga0315293_10023452

Overview

Basic Information

• Taxon OID: 3300031746
• Scaffold ID: Ga0315293_10023452
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5498
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019290	Metagenome	230	Y
F029043	Metagenome	189	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_100234522	F029043	N/A	MSRDEQAIKALQYLLDEGFVSLGYIDGQPSVFLTTSLRDAQKAILGLSKDSADWWK
Ga0315293_100234524	F006138	GAGG	MASTTIGTAGLVFGLTAETIGLVQSFSETRNIEKNEVRNAQGEITGIGYYNPTTAYSLSVAITGSTSLTVGGSFAALANATTVGTCRIDSLTLNKSNSAFVMLDISATGYPNVT
Ga0315293_100234525	F019290	N/A	MEGTSYWGTTNLKVAACVAAFGATLRQSDPVTNIVRDDGSRQVTFWFNAGTGSAEAKKQMECKWSEVTADPESPVLYVRAALENRETLLGLVKRAEPIQIISRGGQTLLVPVNAKPELKRAILRAM
Ga0315293_100234526	F090073	AGG	MNQILDDELNGSFVRPGRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFIWAFLYIHILIAKNRKEAIKLAWNRDEFRDQLLGWIEDKTEDDRTLATNIVSEMIEEASRAKVSVVLSGNITSGND