Scaffold Ga0315293_10013335

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315293_10013335

Scaffold Ga0315293_10013335

Overview

Basic Information
Taxon OID	3300031746 Open in IMG/M
Scaffold ID	Ga0315293_10013335 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7463
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5395	Long. (^o)	-110.3891	Alt. (m)		Depth (m)	61
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056284	Metagenome	137	Y
F092314	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_100133352	F056284	AGGAGG	MSVAGDTQERPKLRVPEYRRRSHLTMTVHPDTINRLAGLTDRYRLPVGQIVDKLVASLDRCFGPDGKPRLLTCVHGEACRMARTDVPEVL
Ga0315293_100133358	F092314	GGAG	MLWLLNWLLKRVTFHLYNSSTPIGKRLGGHDIPNVIDSYIILEVMMSGVSAFHGYFQTS

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