Scaffold Ga0306918_10365484

Overview

Basic Information

• Taxon OID: 3300031744
• Scaffold ID: Ga0306918_10365484
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001481	Metagenome / Metatranscriptome	687	Y
F003919	Metagenome / Metatranscriptome	462	Y
F031185	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306918_103654842	F003919	AGG	MKLVPPDTCIKNYKKRRSAFLEELIASTPNVSVRAKEFRRWIDENSPHSDNDEA
Ga0306918_103654843	F001481	N/A	MTKPKTKVDLALSLGADWPLRQSVTLVDLVAEARALDWDFTNWCCASGYDASDPKARRMFECLLAYARCEGRAGLH
Ga0306918_103654844	F031185	N/A	MLKTLIIATVLLPKLTLAQQSQQLPQPRQPGQWCPVGWVASGSYCVPASDK