NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306918_10307541

Scaffold Ga0306918_10307541


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10307541 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013003Metagenome / Metatranscriptome275Y
F015458Metagenome / Metatranscriptome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0306918_103075412F015458GGAGMPKSALIVVAAALLLGGTSLVSAKNRGAGGAHSKPSRPSINEITPRPSINEITPSPTVADPYYRLSDAYYGDSDPYHGLFDFYAVPPYSPGNAYRYVRPSGRQ
Ga0306918_103075413F013003AGGMNERKAFDWAVRSLRLYDWNPAPDRFQVNGDSLTIRELCERVKKVDEPLSEVIKYDLYPILGHTPDLQAKLRLSETYSVAATCLLEFLTGREHGRN

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