NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306918_10088281

Scaffold Ga0306918_10088281


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10088281 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2176
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006039Metagenome / Metatranscriptome383Y
F032401Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0306918_100882811F032401AGGAMKPMNLAEVRKHTGRELTVEEAAQYVSPRQSYTATHNQACALSAHSWLNSATDWLRLEACLVLL
Ga0306918_100882814F006039N/AMYQHIVVEAANLEMACEMAVSGDIDWDTQEMDSDGAQATTITNAKVVPEEYEADQTHSLIIASRDPNGLPLDMLSFATFLYEDQAKTGPLLEIPAKFTDDE

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