Scaffold Ga0307468_100306092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307468_100306092

Scaffold Ga0307468_100306092

Overview

Basic Information
Taxon OID	3300031740 Open in IMG/M
Scaffold ID	Ga0307468_100306092 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1157
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002096	Metagenome / Metatranscriptome	594	Y
F027598	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307468_1003060923	F002096	GGCGG	MHFFVCWALHQKEREVLLRGVLPWGIDAVVFCWRCDRMRGRAVRVLQLTPNGLHACSGTH
Ga0307468_1003060924	F027598	N/A	ALPQAAAAVEQVSAGGGTACVIHSDEQVLSAYTSDFRVVTSADQLGGCDAVVVVSWGVDLAVRDEAAREFPRLRTLEAYYPAVVLER

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