NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307468_100212634

Scaffold Ga0307468_100212634


Overview

Basic Information
Taxon OID3300031740 Open in IMG/M
Scaffold IDGa0307468_100212634 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1321
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021735Metagenome217Y
F062041Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307468_1002126341F062041N/AAQRAEIWQKQVRPIALTMMLLGPGLGLGMSTLLGALGMGALGDAMGTQVGAETLAATMARAYREISYAYFLMVGGTFPMLLGPVIVLVAQRLEEDGSDARGGEPEEVLLHTLKSLLAVTEAQARRAQADAARMHTLLAETAAAIQRGAAA
Ga0307468_1002126342F021735GGAGMSADELLAASRDPGRSAGDDPAAPAVSLPLRIQPARASALGWSPDLFVLTLLVGNASFRQEDGALVPRGAGPVVAVCAEYERPLVSLAPPALAAYSLVRARLSGMPTLRLPGSFWRAPLRLESTRRAARTSARRDEAIARSGRFLEELNQAWHRKLGAILEIAWPVYRPELSGPLLDAVAGTTLPELALP
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