Scaffold Ga0307468_100173794

Overview

Basic Information

• Taxon OID: 3300031740
• Scaffold ID: Ga0307468_100173794
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1420
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017927	Metagenome / Metatranscriptome	238	Y
F043662	Metagenome / Metatranscriptome	156	Y
F058493	Metagenome	135	Y
F066055	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307468_1001737941	F017927	GGAGG	MLGKLSIIGAFLMIPTALSAQMGGGINPGVHVGDAVNPGATVRGAVERGIPG
Ga0307468_1001737942	F066055	GGAG	VPPTLEARTADRAIASLRKAIEELAAERPREARAMVVNAAGSLAALREMIEGQILKQPGMVK
Ga0307468_1001737943	F043662	GAGG	LFGLMTVTSFINVKVSIYNDNATLFCLSWKHDCAHYHVWIDRHSYTIEADPTFQRRPTLYMTRPQGVRVGMDGYFRTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKVKARERD
Ga0307468_1001737945	F058493	N/A	MTKLKTWLDLALSPDVDWPPHQPVMLKELVAEARAID