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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031740 Open in IMG/M |
| Scaffold ID | Ga0307468_100033658 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2480 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022606 | Metagenome / Metatranscriptome | 213 | Y |
| F046925 | Metagenome / Metatranscriptome | 150 | Y |
| F093548 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307468_1000336582 | F022606 | N/A | MTRSRRATVLLLVALTTGCATAAPQALSPQLEDHQRLANALHPRVRVYGGWAPEDNLGLVQTTPFWKGGFGGLEIWLRGDVVGTPCGQYVIAGLLALRDQTRPLANRGLVSEEAIRNLVSVGWTQQAAEAAMASCPGASVGAGGR |
| Ga0307468_1000336583 | F093548 | GGAGG | LLDLDVVRFVIRRRLEDGLLPRGRMMRVHDTPGDGQMCDACGANITSDQMAMVGATLEGGTRPRHFHALCFRIWDNERHLLDRRTA |
| Ga0307468_1000336585 | F046925 | AGGAG | MVVPGGRRATLHRDEASLMEQPAWACTRCSRVIGPEDTIMFGTSSLSHVDCRRPRVLSTEERALLFLHCYDHSVECAPCASSFRVSELGSDLRGHTNLCPHCRQDLTDRVRAHLHKCDMISEEVRRRAQAVRAASERLVKESREPGDAADVLRQEVETALQALKEAMQQSSPGNLESGSGPALR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |