Scaffold Ga0307468_100005195

Overview

Basic Information

• Taxon OID: 3300031740
• Scaffold ID: Ga0307468_100005195
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4470
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062209	Metagenome / Metatranscriptome	131	N
F069377	Metagenome / Metatranscriptome	124	N
F103972	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307468_1000051956	F062209	AGG	MRPLQALALVALTLACLAAPQTADAQGKLDKAVQILEQQARAGRGEFVTFLMGAASAYRWDSAAPEGPGAERMFCPPPWHSVDGKSYAKIALEEYRRSKSEYTKLTEYPLDVLSLALQRGLRERYPCDAGREASPAKSSPGG
Ga0307468_1000051957	F069377	AGGA	LSLTTIKPTFEAATVVALKMQNDTRRMEIRFVDDAGIEQVVSLPVPAALELARLTLDASAFMARLKEGPAPR
Ga0307468_1000051959	F103972	GGA	MALTPLETDGPAQLRGPDADMWRTLAAWLWMTYLLLVTGAVLWWVF