Scaffold Ga0307383_10000693

Overview

Basic Information

• Taxon OID: 3300031739
• Scaffold ID: Ga0307383_10000693
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-1.R3 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5372
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -45.9539
  • Long. (^o): 6.2869
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307383_100006934	F104391	N/A	MKENEDQQASLEKGECPVSLDPLDQEVKMVRKDQMVNLDHLDPRDHPDTKDPLGWLVCLVSEEFLGLKVLRVEEVIQALLDQLVLMAEQARGVNKESLVLQDPLGRLEVLEIQGRQGLSENRGQLV
Ga0307383_100006936	F094857	GGA	VKLADRALLDPLGCPVKRVQMDQEDPQAKEDHRDLKACQAWKAEREPLVLMDQMDRPDHLDPVDLLGIEEFLVYQALLAQQEPQENKDHKEKGEILASLESKALRDLLDLLVLLGLLVSEASGVRRVHQESRELQGWAVDLVTRVHLVQQE
Ga0307383_100006937	F085090	AGGAG	VCQDLLGWLARLDQSVSLDPLVYRAALERLDHRDSLEPRATAVSLAFRVFLDPLDPKDRRDLQAKTGRTESQVQWAGVVLQDLTDLWVVWATLVLLDQEDHQARKAREVHLASLVLLGLLALRVRAMEWTWLP