Scaffold Ga0307384_10359628

Overview

Basic Information

• Taxon OID: 3300031738
• Scaffold ID: Ga0307384_10359628
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 673
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -49.0129
  • Long. (^o): 2.8377
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095524	Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307384_103596281	F095524	GAGG	VVRQSNWIRSSNMSRAAPSEASKYPPTEFSLKYTKVLAPDGKLETPEKLFGEGGRFDKDVEEKTKLAFKVTMKKLEKYNTASEFNKEHLVTAKVDQIVECFPNTLLKLLPNTIQKTKWSKKSKEVENWDIWWSMHGKILAPLQAQAEIIHKWWEFTGKPDPGVDEVTNGLKRLVTGVLTHPMTIGKAISAYTPKRKKDKP