Scaffold Ga0307387_10001063

Overview

Basic Information

• Taxon OID: 3300031737
• Scaffold ID: Ga0307387_10001063
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-3.R1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5026
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -51.9926
  • Long. (^o): 2.0992
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F043966	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307387_1000106313	F001478	GGTGG	MFRLKDQRYITNEKGKVISVQGGLDNENRNIVMEGRNNEVHQQWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPDHRYLDLINNRNMVIKTRNSRKTQTWYF
Ga0307387_100010632	F001478	GGTGG	MFRYQDGFVTNERAKVLDVSGGVDAENRNLIAFKKHGKINQQWDIIYVDEWKGEPTKGQLNKRFGLYVERDFYVVSSLPDNRYLDLINNRNMVIKIPNGRRTQVWYFHQQSLTIRTRYNNQSWDIKSSGKTNDMQIWSTNSGWW
Ga0307387_100010637	F043966	AGG	MQAIQVHGRHNGANQRWKVLYLDKKAKTETKGLNEEFGFHINRPFYIVSQLPFNRVAECHGANNVWLKRWRNNVKAQQWYFDEVTKTIKNNNWKSHSLDIQSNGGSANIRCTTTNSRWW