Scaffold Ga0318501_10023908

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0318501_10023908

Scaffold Ga0318501_10023908

Overview

Basic Information
Taxon OID	3300031736 Open in IMG/M
Scaffold ID	Ga0318501_10023908 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2615
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008962	Metagenome / Metatranscriptome	325	Y
F013224	Metagenome / Metatranscriptome	273	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318501_100239083	F008962	GAGG	MTAVWLPPWALIITLQAVTASASIGRLTTSYYKVSRAYNALALGAVAADFAIKYFVTGRADDLTSGIVFTHRADDLTGLLVFSVLALRTLLILCIGSLDRSLLARRITCAVTFAACVACTLVAQYIGIYPFRLVALLPAIGIGFGCLGEASDDGVVRRRCILALGCILAGFAFETSAWGLMFKNLLSDAGASAYNMLRYRDPPPWAPFSRGQSVRNDVIAGERHGNTELLADTPPSRSADLDGAAELWSEWQASDR
Ga0318501_100239084	F013224	N/A	AIITPAFQLLSAGASVGRVRTKSYVVSRRFNALALGAVAADFGIKYLCTERADHLVGLVVFTILTARTLLLLSFETIEAEVFRRRFTCAVAFFACAVASVTSELVATGSLALVTLLPLVGIGLGCLGEASNAMVVRRRCVLAMGCIMALFAISTGAWGLVFKNTISDVWASIWSMIKSRDPPAPGACLCHRAQTDHNPHPLRFDAPA

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