Scaffold Ga0307405_10017388

Overview

Basic Information

• Taxon OID: 3300031731
• Scaffold ID: Ga0307405_10017388
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3945
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005860	Metagenome / Metatranscriptome	388	Y
F045482	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307405_100173883	F005860	GAGG	MSIQPPPPSAEQLTAWQALIKRIRQGDRSQVLAWDEGTAAKSEGTYQVLVPQQLHRRLRGAPPLLAGSVAGIVAVLRVDPTEASMIFRRRRLGDSGWTVTFGAAQGTLTYWVLQPERIVVLLDLTWAG
Ga0307405_100173885	F045482	GGAGG	MAAFVLFVLAVAGGMVVADLVGENPTAGQVTAFGQTVGGYPEGWLLATAAGLGFVAALLLVASVNSTKERRARRKQLRGLRQGLEDQVVVPKPDHARLLDAFFGPEEPSRHLGGPARPADPRGEGPESRAEDHQGWVTAPPIQHSTEPLYQQVRSAQVREDGWEGRAEHDQRWGTGELVQHPPEPLYEQARRAAGLGQDWDLPVAASQGRRR