NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307516_10218522

Scaffold Ga0307516_10218522


Overview

Basic Information
Taxon OID3300031730 Open in IMG/M
Scaffold IDGa0307516_10218522 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1616
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008669Metagenome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0307516_102185221F008669GAGMPFSIEWMRKGYSVMMKSGRSRLEERFEMAITFDATVGSRSNSYPSFRMLFFMEWMRNRYSVKMRSGRARIE
Ga0307516_102185222F008669GGAGMPFSIEWMRKGYSVMMKSCRSRLEERFEMAITFDATVGSRSNSYPSFRILFFMEWMRNRYSVMMRSGRARIE

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