Scaffold Ga0307516_10029112

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10029112
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5585
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011092	Metagenome	295	Y
F068294	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_100291122	F068294	N/A	LRPFLRKTRCFLRILRWAGHPILRPFLRKARCFQRILRWAGHPILRPFLRKAWSFLRIFGWASHPILRPFLRKAWSFLRILREARHPILRPFFRKAWSFFKKKFRWTSHPILKPSFRKAWSFLRIFGGACHPILRPFLRKTWSFLRILRGTSHLILKLFLRKAWSFLRILRGAGHLILRPFFRKAWSFLKQKEREV
Ga0307516_100291123	F011092	AGCAGG	LRPFLRKAWSFLRILGGACHPILRPFLRKAWSFLRILRRVSHSILRLFLREALSFLRIIR