Scaffold Ga0307516_10012982

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10012982
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8923
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae → Pyronema → Pyronema omphalodes → Pyronema omphalodes CBS 100304 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y
F087977	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_100129821	F087977	N/A	TSTMSMRMAVRRMPAARTMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307516_100129824	F087977	AGGAG	MRMAVRRMPAARTLVQVRRGKKIDELCEIVSAALRVTDSGKLYNTTRRV
Ga0307516_100129825	F087977	AGGAG	MRMSVRRMPAARMMVQVRRSEKIDELHEIVSAALKGTDSEKLYNTTRGVRCR
Ga0307516_100129826	F029299	AGGA	MANALTLRVQKADAVARIVRTTFALTLCIRKKFALTVSVCKERAVFGWLTP
Ga0307516_100129829	F029299	N/A	MANALTLRFQKLDAVASIVRTTIALTLCIRKKFASTVSLCKKCAASGWQMP