Scaffold Ga0307516_10002786

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10002786
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23075
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (44.23%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y
F087977	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_1000278620	F029299	N/A	MANALTLHVQKADAVARVVPTTFALTLCVRKKFALTVSVCKKRAVSGWLTP
Ga0307516_1000278624	F029299	N/A	MRCVRMANALTLLVWKADAVASAVRTTIALTLCIRKKFALTVSVCKKRAASGWQMP
Ga0307516_1000278625	F029299	N/A	MANALTLLVQKLDAVARVVATTFALTLCVRKKFALTVSVCKKRTASRWLVP
Ga0307516_1000278626	F029299	N/A	MANALTLCVQKADAVARVVPTTFALTLCIRKKFALTVSVCKKRAASGWLTP
Ga0307516_1000278627	F029299	N/A	MANALTLLVQKLDAVAHVVPTTIALTLCVRKKFALTVSVCKKRTASGWQMP
Ga0307516_1000278628	F029299	N/A	MSNALTLLVQKLDAVARIVPTTFAWTLCVRKKFALTVSVCKKRAASGWLTP
Ga0307516_1000278629	F029299	N/A	MANALTLLVQKLDTVARVVPTTFALTLCVRKKFALTVSVCKKHAASGCLTP
Ga0307516_1000278635	F029299	N/A	MANTLTLLVRKADAVASAIRTTIALTLCVRKKFALTVSVCKKRAASGWQMP
Ga0307516_1000278641	F029299	AGGA	MANALTLRVQKADAVARVVWTTFALTLCVRKKFALTVSICKERAASGWQMP
Ga0307516_1000278642	F029299	GGCGG	MGNALTLHVQKADAMVRVVQTTFALTLCVRKKFALTVSVCKERAASGWQMP
Ga0307516_1000278643	F087977	GAG	MRMAVRRMPAARTMVQVRRGEKIDELREIVSAALTLTDSGKLYNTT
Ga0307516_1000278644	F087977	GAG	MRMAVRRMPAARTMVQVRRGEKIDDLREIVSAALTVTDSGKLYNTM
Ga0307516_1000278645	F029299	N/A	MANALTLRVQKADAVARVVRTTFALTLGVRKKFALTVSVCKERAASGWQMP
Ga0307516_1000278646	F029299	AGGA	MANALTLRVQKADAVARVVRKTFALTLCVRKKFALTVSICKERAASGWQMP
Ga0307516_1000278649	F029299	N/A	MANALTLLVQKLDAVARVVPTTFALTLCVRKKFALTVSVCKKRAESRWLTP
Ga0307516_1000278650	F029299	GAG	MANTLTLRFQKLDAVASVVRTTIALTLCIRKKFAATVSVCKKRTASGWQMP
Ga0307516_1000278651	F029299	N/A	MANALTLRVQKADAVACVVRMTFALTLCIRKKFALTVSVCKKHAASGWLTP