Scaffold Ga0307516

Basic Information
Taxon OID	3300031730 Open in IMG/M
Scaffold ID	Ga0307516_10000831 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42265
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (53.23%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

42265

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (53.23%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	47.5302	Long. (^o)	-121.825	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

47.5302

Long. (^o)

-121.825

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y
F042662	Metagenome	157	Y
F087977	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_1000083120	F029299	GGA	MANALTLRVQQADAIARIVPTTFALTLCVRKKFALTVSICKKRAASGWQMP
Ga0307516_1000083122	F029299	GGA	MANALTLRVQKADAVARVVRTTFALTLCVRKKFALTISVCKEPAASGWQMP
Ga0307516_1000083129	F029299	N/A	MANALTLLVQKLDVVARVVPTTFALTLCVRKKFALTVSIGKNRAASGWLTP
Ga0307516_1000083133	F029299	AGGA	MANALTLHVQKADAVACVVQTTFALTLCIRKKFASTVSVCKKRAASGWQMP
Ga0307516_1000083135	F029299	N/A	MANALTLSVQKADAVACVVRTTFALTLYVRKKFTLTVSACKKRAASGWLTP
Ga0307516_1000083138	F029299	N/A	MANALTLRVQKADAVARIVRTTFAFTLCVRKKFGLTVSICKEHAASGWLTP
Ga0307516_1000083139	F087977	GGCGG	MPAARTMVEVRRGEKIDELREIVSAALTVTDSVKLYNTT
Ga0307516_1000083141	F087977	GAG	MRMAVRRMPAASTMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307516_1000083151	F042662	N/A	MTCFDDNYFEDHLYLLELSTFLEPKSQYAFDYTFQSIDDEISKYEQWEEFFDGPKPIHEIIDCAPYHWYTQQWWNCALLSQPADFDEDELFDLFDYHFDYDSTIHSGDFLDHY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307516_10000831

Overview

Ecosystem & Geography

Associated Families

Sequences