Scaffold Ga0307516_10000374

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10000374
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58544
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (45.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011721	Metagenome	287	Y
F042662	Metagenome	157	Y
F089601	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_100003744	F011721	N/A	MPSFEQEHFFLLDLATILEPQSSYQFDYTFSSINEEIATALKEENKWNEYDNGPAPVELDDITPWHWYTQYWATCALLRQCANLNGLEFREIGDYEFLDDETIYTGHFLDLY
Ga0307516_100003747	F089601	GAG	MSGRQGPAGDGGAVDADGPASLLPGLELFIHSLLFGDDGSQGVGHLLELLLVHIVELVHPLGERLVYDVIVAGVPGGCLMYHSDDFSQEGELFIL
Ga0307516_1000037475	F011721	N/A	MPSFEENHFLLLDLATILEPQSSYQFDYTFTSILEELLCEEKWDNYHDGDTPEEEIDDTPWSWYTQYWFNCVFLRQCANLNGLEFPEICDYEFYDNETIYTRHFLDLY
Ga0307516_1000037482	F042662	N/A	MTYFDDTYFEDHLYLLELSTFLQPRSQYFLDYTFQSINDEISQHEQWEEFFDGPKPIHETIECAPYHWYTQQWWYCALLSQPANFDEDKLFDLFDYHFDYDSTIHSGDFLDLY