Scaffold Ga0307516_10000200

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10000200
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77867
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (40.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011056	Metagenome	295	Y
F102193	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_1000020035	F102193	N/A	MPSFEQDYFFLLELSTIFEPQSSYHFDYTYSPIESLLDQEAWDTHTDGPIPLETVDCTPRHWYTEYWFDCAFAHQGANLSGLDFRDICDYEFIDDETIYTRDFLDWY
Ga0307516_1000020066	F011056	N/A	MTNFDYTYFEDHLYLLELSTFLEPKSQYSFDYTFQSIDSELADYEQWDTFSDGPIPTPYLEGDHEPWNSYTQYWVNCTNSHTSAEFTEDELRDLCDYYFTDDETI
Ga0307516_100002009	F011056	N/A	MTCFDATYFEDHLFLLELSTFLEPQSQYSFDYTFQSIDSELANYEQWDTLIDGPIPQAYQEGHYDPWNWYTQYWLNCTHNQQSAEFTENELQNLFDYNFGDDETIYSGDFLDAY