Scaffold Ga0316576_10720424

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0316576_10720424

Scaffold Ga0316576_10720424

Overview

Basic Information
Taxon OID	3300031727 Open in IMG/M
Scaffold ID	Ga0316576_10720424 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	722
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location Name	USA: Alabama
Coordinates	Lat. (^o)	30.2619	Long. (^o)	-88.2383	Alt. (m)		Depth (m)	0 to .02
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037264	Metagenome / Metatranscriptome	168	Y
F039161	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316576_107204241	F039161	AGGAG	VWWECSECGGHIERSRAPLLCSECGTAGVIFVPVDIDDPIAGAPEADSLRAVWLRAGLEQARNTLAAS
Ga0316576_107204242	F037264	AGGA	MSLDLSHLRRDARTALELAVVALAPSELVDRLAVSAGLLEALVELPTDSAPVIALVPKLVTRTRTALDDWQQWHHEHLEGRIPRG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.