Scaffold Ga0316576_10321249

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316576_10321249

Scaffold Ga0316576_10321249

Overview

Basic Information
Taxon OID	3300031727 Open in IMG/M
Scaffold ID	Ga0316576_10321249 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1155
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location Name	USA: Alabama
Coordinates	Lat. (^o)	30.2619	Long. (^o)	-88.2383	Alt. (m)		Depth (m)	0 to .02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004633	Metagenome / Metatranscriptome	430	Y
F054972	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316576_103212491	F004633	GGGGG	MKLLMATLAYVMIGVLLGWGILLAVKGQPWMLIVGFLAYAVAFAKLGCLPK
Ga0316576_103212492	F054972	N/A	MRRLLKSVKTREYFGDGYWTPDPALAQDFPDAGKAIDTCLKHHLTDVELVLQLNAEPHDFCDTHLRLFDYGLTA

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