Scaffold Ga0308013_10127315

Overview

Basic Information

• Taxon OID: 3300031721
• Scaffold ID: Ga0308013_10127315
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 981
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048648	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308013_101273153	F048648	N/A	MATSNLHRYSVQEAQNRLGGGGYDYVTNATVNSHTYVAIQALSVNCVITATSANTDIWDTLTTVTILAGQTIYGEWSSVVVANGDFALVYRKNS