Scaffold Ga0307469_10193955

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10193955
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001619	Metagenome / Metatranscriptome	662	Y
F028828	Metagenome	190	Y
F058741	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_101939551	F058741	GAGG	MDPYPTVENSSTARGAIAPADGNAGAGVATASLPAGLALAPGSEERQQDAGATNALIDLGPNNERLEDVKPELVNALRELVREYRQEGVVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFDQRSGDYRALEEMPRYQFVTNFYQGF
Ga0307469_101939552	F001619	AGG	MKSFLQRLFQGRYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQIQAWRETSAARDAAQNFDDREEARANGPVPHS
Ga0307469_101939555	F028828	N/A	GMPLGEQIERQVSATDPSSRAIHFQRLESEAKKFFRSKPLPRRRW