Scaffold Ga0307469_10162870

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307469_10162870

Scaffold Ga0307469_10162870

Overview

Basic Information
Taxon OID	3300031720 Open in IMG/M
Scaffold ID	Ga0307469_10162870 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1689
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059382	Metagenome	134	Y
F087270	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_101628702	F059382	GGAGG	MKSEDPEVIQLELKYCERCGALWLRLRGAQEIYCAPCDLEMLDLPSPRKITSRPRLPGNHKIEIKAQAGELAVYCGKGGTA
Ga0307469_101628704	F087270	AGAAGG	VRTETTKARVASPVKSGGREAPDLAEIRRHIAALVGDGAVGMVETTIDQVGKGHYLGMKYLFEMIGLYPATSTNDAAEEDSLAAVLLRRLGLPEAPIEKPGVTKDSEASAVAVKDSLE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.