Scaffold Ga0307469_10038494

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10038494
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2876
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100384941	F020766	AGCAG	MVDLVTGGIVLFAIMVAAGIIPLILALRVKVRSLRILSLLLGLFAIIHGFYHLASGYEQEFLADAIFEPISLLLLVGLGAYYSKVGTV
Ga0307469_100384942	F017116	AGGTGG	MAYDIIDAFETLNLVLILVAFAIFTRLAFKGKSLGNFRFQLSIFLLIWVLSELPHIAGSLGLISTAAYSDVGLYLHATSMGVFAFFVGWRSIKIATLHTNPPTGALAVPKEPPRGIKG
Ga0307469_100384943	F011479	AGG	VTSFDELVSQSVTETMSKILGTDTWKAINFFFDMNIIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGAPQQTSSNFDFRQILRLAKAKFPRQALPDQLGP