Scaffold Ga0307469_10031232

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10031232
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3093
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100312324	F025249	GGAG	MNSLSLGLTTSPSENRDSSKGSDTRAPPPSVFGIIVVGLLTGLVVGLLIGPSFTLQGFFVGFAGGALITAGLYFYTSGRSRPSR
Ga0307469_100312325	F028763	GGAG	MSEEARSKRRIALGVFAIIMGCISLVGLSSTSYYFGLGIFGGSYGAVMIALGVALIAKKEAIT
Ga0307469_100312326	F014601	GAGG	MSGSTGENLRPSPIPRAILAGLIAGIAAGLISYYAINSILGLIIGFIAGALVGSRTVLLMQKAREQDQ