Scaffold Ga0307469_10018796

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10018796
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3689
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000877	Metagenome / Metatranscriptome	851	Y
F003623	Metagenome / Metatranscriptome	476	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100187962	F003623	N/A	LTGLCFKDNDAGIVLVFVRLRSLLFALCPDHPVALCGTCRRTYTPEQLGTELGDRCYLCRDCGSDLRESVVAHARTCPNLIPQKPLARMGSVTKSTTPPVVSERFEARRRARLGLDVHAAAR
Ga0307469_100187967	F000877	GAGG	MLAVVLEVYEGGKDLIPGWKLKEHAESALATGGVEGLRRYYEACLSGSDHRVKTTLEGDRRKTLESERARFMAMYLGPARR