Scaffold Ga0307469_10001589

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10001589
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8829
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008873	Metagenome / Metatranscriptome	326	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100015894	F008873	N/A	MTEKKKEDEKTPAKLLPFVEPQLFVAVEEANRRLKEIMKVTRPTERLYKSIQRITEVSEMMLRRQDQLTKLFEPSENVRQYLERIRQLVEQLTRTKQNELPQISRTIIPQLEIEVSGYVEEFERALAEKEKEIEALKAELEALKSRTKN
Ga0307469_100015896	F011479	AGG	VTSFDELVSQSVTETMSKILGTDTWKAINFFFDMQIIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGASQRTSSNFDLRQILRLAKAKFPRQALPDQLGP
Ga0307469_100015897	F017116	GGA	MAYDIIDVFETFNLVLILAAFAVFTRLAFKGKSLGNFRFQLSIFLLIWVLSEIPHIAGSLGLISTAAYSDIGLYLHATSMGVFAFFVGWRSIKIATLHPNPPTGALAIPKEPPRGIKG
Ga0307469_100015898	F020766	AGCAGG	MVDLVTGGIVLFAIMVAAGIIPLILAFRVKVRSLRILSLLLGLFAIIHGFYHLASGYEQEFLADAVFEPISLLLLVGLGAYYSRVGTA