Scaffold Ga0307469_10001415

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10001415
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9232
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013282	Metagenome / Metatranscriptome	272	N
F019975	Metagenome / Metatranscriptome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_1000141510	F019975	GAG	LALSGVPHLPFQEFTVSSLEALLNILKKARIKDSEIEVSTSEESQHTTCAKPIMHVLVMTAKGEGAGEHKDLAALYQYCPGCGSAVRVL
Ga0307469_100014154	F013282	GGAG	MTDKLAGKDDSQRLLGYVESVAKESRKALTLEFNEKHKGIPFNTTGQILRDSLVVWFGRRDKNLKIVPETVNSGKLGEVRAVFGGETKSVRFKVRADATFSLAGGSADSPCYLRELNVSIDRRS