NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10001259

Scaffold Ga0307469_10001259


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10001259 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9578
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003458Metagenome485Y
F076915Metagenome / Metatranscriptome117Y
F086673Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0307469_1000125910F086673N/ALSNPALFSRTVSPPKSRDEIGELAKHLAYSVVAGYLEHDRGHLDKSVEGFFQVYLHLFAKVSPLRARRAAELYVEALVKQDEIENSEGHSAEQIVGDPLWGDVRKILLEFSRTLGLSDSYADETTDFFRYHGVRDKTWVIHCIESENIFMTEAIGNSYWSKMLGSLLILLTDCHDKHDTTGLETGIEFATKYYEIILRAKSSPSQKVPVLSA
Ga0307469_100012594F076915GGAGLTTTLASGTTSAVQKQKPTLEQEVFKLKLAWMIAKNDDEKRRISEEIRRLIGFSPPKSQ
Ga0307469_100012597F003458GAGGMVESRIPPGVSLLLIGSGMYWILSSQLISSFTVLSPGLFQADALAASLITIVGIISTTVGLWIVKVDVEELRGLFARRDGWIFTVPLALVAADVYLTLIVLSTNSRIVELNPFVSSAIAIGATALVPFIISYLALSQGLGLFMLRIGSYLFGPLKSSRYLPFVSICGAAAFGPASNLVLLVDPNAGLMAYFFGALGCALLSVILFTRVEKTARIT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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