NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10132519

Scaffold Ga0307474_10132519


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10132519 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003631Metagenome / Metatranscriptome476Y
F004157Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_101325192F003631N/AMELLLNLAWMLLALPAVWLWRRGGDARVARRVTARQCLLALGCAVVLLFPVISATDDLHAMRAEMEESATNKRTVLQAGSEKNSTWINRLQGPPALMASIAWTPAPEAGRFEISAVCLVPVARPCVLHMGRAPPGSLLG
Ga0307474_101325193F004157N/ASMTKFRHSVVACTLAMAMGVVGEAAGQASPPTSATAQARTGAAKDTDGGLVIEPTELPATYPHGRYQVLFQGRGNYVPVLRWRVESGILPPGIKLDDNGLLHGEAERAGEFQFVVSATDGGQPQQAVQRGFAIKVVEAITLVWKNPAHVAGNRIEGSVEISNTTADDMDLTFDVKAVAENGRATEIGYQRFPLKRGTIAMALPFGETLPHGAYLVYVNVNGEVAKRNAIYRQQMQTPAPLQVVVGP
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