Scaffold Ga0307474_10027530

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10027530
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4154
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_100275302	F025325	AGGAGG	MLGDSPKRLKKTWEELTAAASMETDPEKLGTILEEILAALEERQRTQSLPLNAFAGNRQL
Ga0307474_100275303	F005268	AGGAG	VNRPDEETEQQQAWRVLSEAGLVEIRLHEFAEKIEDVKRIVIVRLRELLDFNTGIKERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0307474_100275304	F003832	N/A	MKSTAKLLRSDANWPPEEGQIISFRSSSGSETTILKEVRWGLVWRDFILQDGRVIPEHRISGCPQPQVWRKTNEVTDNEREECEERLLSMAGAGMDPRKRDQAFWAELNQYLAYTYLRFKQTGCEVEDTER
Ga0307474_100275306	F014888	AGGAG	MSKVIEVLLTVVALAALYSAIPASIPPPGNSAIRAEQAVVVADGSDPMPLCRARACK