Scaffold Ga0307474

Basic Information
Taxon OID	3300031718 Open in IMG/M
Scaffold ID	Ga0307474_10000916 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21248
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21248

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (86.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F004246	Metagenome / Metatranscriptome	447	Y
F011101	Metagenome / Metatranscriptome	295	Y
F015646	Metagenome / Metatranscriptome	253	Y
F085999	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_1000091613	F015646	AGGA	MKTSCFTTVLSLSCCLLGFGGSAHAAGNNTHSVEIYHVVQIGGTTLKPGNYKVEWQGTGPAVQVSFQQNGKTVVTSLGTLRTNDDQVRQDAIVTEATGAGTSTLKEIDFGHQKEALVFDQNPGAM
Ga0307474_1000091615	F011101	AGGA	MQDRAVKFASAAFFITSIALASDTWILDSSTSNARLFHSTANPESSNTAVGRVTGKVKLDSNDLETSIFDLSIYPADEGWEHVLSLGGSLPTIYVPNATDRTLLTFKSIRILRTGNGRLEVVGDLTLTRVERAVIATPTEAYDGPAYGGPVIHNETREITFLFPSVSPEHLSAPLIPALVQKVGVLEIVGSARVDHGEFPEPSSAIKETTWPAVVQNKVCHMPSKVGENYVGAPCTGTVDAAMRDNNCDVLASAREDYSGLQCTPRTGNQTTIVLDLRFLHKVQELSVAAHSGTESSGMPLRVG
Ga0307474_1000091616	F085999	AGGA	MKTILKIRTLIYVVLAVGALLSTPGADASDSVSYPAYLEAKVIAYLPLSGGIRRMFLQQEGRRQFLYVQQPSQKGVTVIDITKPERPKVVNQVPLENLTMVSFGLAIFETPENSATVGASLATGNAEGPHGSGVLESVRVLDVSDPAHPRTVQNFGGVTSILQDSAQNLFYVANGDGVWIVSHQQVLRRHECGSSDAISPLPNCD
Ga0307474_100009167	F003165	AGGAGG	MAKVFEFYLRKNFRKPLNWPPQLQCGKVIEFCSQTKKSA
Ga0307474_100009169	F004246	GGAGG	MLDDWDESDEVVAAGSICPVPDCGALVISYGLSDRAGRDSARSWCEFACTRCGTDFTVPEDELIFQSVPKEWLLARVQAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307474_10000916

Overview

Ecosystem & Geography

Associated Families

Sequences